dalicious.genome

Some functions to work with FASTA data.

Members

complement C complement(C base): Get the complement of a DNA base. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.
getFastaLength size_t getFastaLength(in string fastaFile)
size_t getFastaLength(File fastaFile): Calculate the sequence length of the first record in fastaFile. Returns the length of the next record in fastaFile if it is a File object.
parsePacBioHeader PacBioHeader!T parsePacBioHeader(T header): Convenience wrapper around PacBioHeader!T(T header).
reverseComplement T reverseComplement(in T sequence): Compute the reverse complement of a DNA sequence. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.
reverseComplementer auto reverseComplementer(Range sequence): Compute the reverse complement of a DNA sequence. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.

headerIndicator enum headerIndicator;: Lines starting with this character designate the beginning of a FASTA record.