SequenceAlignment.toString

Get a string representation of this alignment. Visual alignment breaks unless elements of the sequences convert to single chars via to!string.

struct SequenceAlignment(S, alias scoreFun = "a == b ? 0 : 1")

const pure

string

toString

(

alias matchSymbol = '|'

alias substitutionSymbol = '*'

alias indelSymbol = ' '

alias gapSymbol = '-'

)

(

in size_t width = 0

)

Examples

auto alignment = findAlignment("ACGTC", "AGTC", 1);
assert(alignment.toString ==
    "ACGTC\n" ~
    "| |||\n" ~
    "A-GTC");

auto alignment = findAlignment("GCATGCT", "GATTACA", 1);

assert(alignment.toString ==
    "GCAT-GCT\n" ~
    "| || *|*\n" ~
    "G-ATTACA");